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BioNetVisA: biological network reconstruction, data visualization and analysis in biology and medicine

Date:

Friday, September 4th

Time:

13:30 - 16:30 (CEST)

Organisers 

  • Emmanuel Barillot | Institut Curie, France
  • Hioraki Kitano | RIKEN Center for Integrative Medical Sciences, Japan
  • Alfonso Valencia | Spanish National Bioinformatics Institute, Madrid, Spain
  • Samik Ghosh | Systems Biology Institute, Tokyo, Japan
  • Inna Kuperstein | Institut Curie, France
  • Cristóbal Monraz Gómez | Institut Curie, France
  • Robin Haw | Ontario Institute for Cancer Research, Canada
  • Andrei Zinovyev | Institut Curie, France

Speakers

  • Sucheendra K. Palaniappan | SBI, Tokyo, Japan
  • Samik Ghosh | Systems Biology Institute, Tokyo, Japan
  • Tamas Korcsmaros | Earlham Institute, Norwich, United Kingdom
  • Marek Ostaszewski | LCSB, Luxembourg
  • Angela Bauch | Biomax Informatics AG, Planegg, Germany
  • Dieter Maier | Biomax Informatics AG, Planegg, Germany
  • Elena Sugis | Institute of Computer Science, University of Tartu, Estonia and UNIL, Lausanne, Switzerland
  • Ioannis Xenarios | UNIL, Lausanne, Switzerland
  • Luana Licata| University of Rome Tor Vergata, Rome, Italy
  • Carlos Vega | LCSB, Luxembourg
  • Vidisha Singh | University Evry - Paris Saclay, France
  • Cristóbal Monraz Gómez | Institut Curie, Paris, France
  • Davide Cirillo | BSC, Barcelona, Spain
  • Martina Kutmon | Maastricht University, Nederlands
  • Robin Haw | Ontario Institute for Cancer Research, Canada

Summary

BioNetVisA workshop brings together different actors of network biology from database providers, networks creators, computational biologists, biotech companies involved in data analysis and modelling to experimental biologists, clinicians that use systems biology approaches. The participants are exposed to the different paradigms of network biology and the latest achievements in the field.

Motivation

The goal of BioNetVisA workshop is to build a discussion around various approaches for biological knowledge formalisation, data integration and analysis; compatibility between different methods and biological networks resources available the field; applicability for concrete research and clinical projects depending on scientific question and type of high-throughput data.

The BioNetVisA workshop aims at identifying bottlenecks and proposing short- and long-term objectives for the community as discussing questions about accessibility of available tools for wide range of user in every-day standalone application in biological and clinical labs.

For more details check BioNetVisA website https://bionetvisa.github.io

Target audience

The workshop targets computational systems biologists, molecular and cell biologists, clinicians and a wide audience interested in update and discussion around current status of network biology, pathway databases, and related analysis tools, including visualization, statistical analysis and dynamic modelling. No computational background is required to attend the workshop.

Schedule

Time (CEST)
Details
13:30 - 13:50 COVID-19 Taxila: mining patterns in text in the fight against the pandemic - Sucheendra K. Palaniappan and Samik Ghosh
13:50 - 14:05 Using inter-cellular communication maps to facilitate network medicine - Tamas Korcsmaros
14:05 - 14:25 COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms - Marek Ostaszewski
14:25 - 14:40 AILANI COVID-19 - literature mining and artificial intelligence based question & answering - a scientific assistant for COVID-19 research - Angela Bauch and Dieter Maier  
14:40 - 14:55 HENA, Heterogeneous Network-Based Data Set for Alzheimer's Disease - Elena Sugis and Ioannis Xenarios
14:55 - 15:10 Contextualization of molecular networks for human diseases - Luana Licata
15:10 - 15:20 BioKC: a platform for quality controlled curation and annotation of systems biology models - Carlos Vega
15:20 - 15:30 RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis - Vidisha Singh
15:30 - 15:40 Comprehensive map of the Regulated Cell Death Signaling Network: a powerful analytical tool for studying diseases - Cristóbal Monraz Gómez
15:40 - 15:50 The dynamics of multilayer network community structure - Davide Cirillo
15:50 - 16:05 WikiPathways: Pathway Models for Network Analysis - Martina Kutmon
16:05 - 16:30 Reactome Pathway Knowledgebase: Variants, Dark Proteins and Functional Interactions - Robin Haw